******************************************************************************** conan test cci-5b63a183/recipes/hictk/all/test_package/conanfile.py hictk/0.0.1@#69cb9b9b928bea8f1f4c99bb1bb8ac59 -pr /home/conan/w/prod-v1/BuildSingleReference/3963/694e1648-8a1b-4bc8-87e9-48f62f9ca83f/profile_linux_7_libstdcpp11_gcc_release_64..txt -c tools.system.package_manager:mode=install -c tools.system.package_manager:sudo=True ******************************************************************************** Configuration: [settings] arch=x86_64 build_type=Release compiler=gcc compiler.libcxx=libstdc++11 compiler.version=7 os=Linux [options] [build_requires] [env] [conf] tools.system.package_manager:mode=install tools.system.package_manager:sudo=True hictk/0.0.1 (test package): Installing package Requirements boost/1.81.0 from 'conan-center' - Cache bzip2/1.0.8 from 'conan-center' - Cache eigen/3.4.0 from 'conan-center' - Cache fast_float/5.2.0 from 'conan-center' - Cache fmt/10.0.0 from 'conan-center' - Cache hdf5/1.14.0 from 'conan-center' - Cache hictk/0.0.1 from local cache - Cache highfive/2.7.1 from 'conan-center' - Cache libbacktrace/cci.20210118 from 'conan-center' - Cache libdeflate/1.18 from 'conan-center' - Cache nlohmann_json/3.11.2 from 'conan-center' - Cache parallel-hashmap/1.3.11 from 'conan-center' - Cache spdlog/1.12.0 from 'conan-center' - Cache xsimd/10.0.0 from 'conan-center' - Cache xtensor/0.24.3 from 'conan-center' - Cache xtl/0.7.5 from 'conan-center' - Cache zlib/1.2.13 from 'conan-center' - Cache Packages boost/1.81.0:cfef62e446e1bb07894de4523f2649afdfa94524 - Cache bzip2/1.0.8:b27e2b40bcb70be2e7d6f0e0c6e43e35c530f8d3 - Cache eigen/3.4.0:5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9 - Cache fast_float/5.2.0:5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9 - Cache fmt/10.0.0:24369dce2ff7b70a1205cc930900cfb72c391122 - Cache hdf5/1.14.0:e671ab4fbe82957d3db7f418a83efebd88ee9ca5 - Cache hictk/0.0.1:5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9 - Cache highfive/2.7.1:5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9 - Cache libbacktrace/cci.20210118:d50a0d523d98c15bb147b18fa7d203887c38be8b - Cache libdeflate/1.18:d50a0d523d98c15bb147b18fa7d203887c38be8b - Cache nlohmann_json/3.11.2:5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9 - Cache parallel-hashmap/1.3.11:5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9 - Cache spdlog/1.12.0:17ec756642fe2e8d960168c348ffcd9f4ca1e984 - Cache xsimd/10.0.0:5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9 - Cache xtensor/0.24.3:5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9 - Cache xtl/0.7.5:5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9 - Cache zlib/1.2.13:d50a0d523d98c15bb147b18fa7d203887c38be8b - Cache Installing (downloading, building) binaries... bzip2/1.0.8: Already installed! eigen/3.4.0: Already installed! fast_float/5.2.0: Already installed! fmt/10.0.0: Already installed! libbacktrace/cci.20210118: Already installed! libdeflate/1.18: Already installed! nlohmann_json/3.11.2: Already installed! parallel-hashmap/1.3.11: Already installed! xsimd/10.0.0: Already installed! xtl/0.7.5: Already installed! zlib/1.2.13: Already installed! boost/1.81.0: Already installed! hdf5/1.14.0: Already installed! spdlog/1.12.0: Already installed! xtensor/0.24.3: Already installed! highfive/2.7.1: Already installed! hictk/0.0.1: Already installed! hictk/0.0.1 (test package): Generator 'CMakeToolchain' calling 'generate()' hictk/0.0.1 (test package): Preset 'release' added to CMakePresets.json. Invoke it manually using 'cmake --preset release' hictk/0.0.1 (test package): If your CMake version is not compatible with CMakePresets (<3.19) call cmake like: 'cmake -G "Unix Makefiles" -DCMAKE_TOOLCHAIN_FILE=/home/conan/w/prod-v1/BuildSingleReference/cci-5b63a183/recipes/hictk/all/test_package/build/Release/generators/conan_toolchain.cmake -DCMAKE_POLICY_DEFAULT_CMP0091=NEW -DCMAKE_BUILD_TYPE=Release' hictk/0.0.1 (test package): Generator 'CMakeDeps' calling 'generate()' hictk/0.0.1 (test package): Generator 'VirtualRunEnv' calling 'generate()' hictk/0.0.1 (test package): Generator txt created conanbuildinfo.txt hictk/0.0.1 (test package): Aggregating env generators hictk/0.0.1 (test package): Generated conaninfo.txt hictk/0.0.1 (test package): Generated graphinfo Using lockfile: '/home/conan/w/prod-v1/BuildSingleReference/cci-5b63a183/recipes/hictk/all/test_package/build/Release/generators/conan.lock' Using cached profile from lockfile [HOOK - conan-center.py] pre_build(): [FPIC MANAGEMENT (KB-H007)] 'fPIC' option not found [HOOK - conan-center.py] pre_build(): [FPIC MANAGEMENT (KB-H007)] OK hictk/0.0.1 (test package): Calling build() hictk/0.0.1 (test package): CMake command: cmake -G "Unix Makefiles" -DCMAKE_TOOLCHAIN_FILE="/home/conan/w/prod-v1/BuildSingleReference/cci-5b63a183/recipes/hictk/all/test_package/build/Release/generators/conan_toolchain.cmake" -DCMAKE_POLICY_DEFAULT_CMP0091="NEW" -DCMAKE_BUILD_TYPE="Release" "/home/conan/w/prod-v1/BuildSingleReference/cci-5b63a183/recipes/hictk/all/test_package/." ----Running------ > cmake -G "Unix Makefiles" -DCMAKE_TOOLCHAIN_FILE="/home/conan/w/prod-v1/BuildSingleReference/cci-5b63a183/recipes/hictk/all/test_package/build/Release/generators/conan_toolchain.cmake" -DCMAKE_POLICY_DEFAULT_CMP0091="NEW" -DCMAKE_BUILD_TYPE="Release" "/home/conan/w/prod-v1/BuildSingleReference/cci-5b63a183/recipes/hictk/all/test_package/." ----------------- -- Using Conan toolchain: /home/conan/w/prod-v1/BuildSingleReference/cci-5b63a183/recipes/hictk/all/test_package/build/Release/generators/conan_toolchain.cmake -- The CXX compiler identification is GNU 7.5.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Conan: Target declared 'hictk::libhictk' -- Conan: Component target declared 'FastFloat::fast_float' -- Conan: Component target declared 'Eigen3::Eigen' -- Conan: Component target declared 'fmt::fmt' -- Conan: Component target declared 'hdf5::hdf5' -- Conan: Component target declared 'hdf5::hdf5_cpp' -- Conan: Component target declared 'hdf5::hdf5_hl' -- Conan: Component target declared 'hdf5::hdf5_hl_cpp' -- Conan: Target declared 'HDF5::HDF5' -- Conan: Target declared 'ZLIB::ZLIB' -- Conan: Including build module from '/home/conan/w/prod-v1/BuildSingleReference/.conan/data/hdf5/1.14.0/_/_/package/e671ab4fbe82957d3db7f418a83efebd88ee9ca5/lib/cmake/conan-official-hdf5-variables.cmake' -- Conan: Target declared 'HighFive' -- Conan: Component target declared 'Boost::diagnostic_definitions' -- Conan: Component target declared 'Boost::disable_autolinking' -- Conan: Component target declared 'Boost::dynamic_linking' -- Conan: Component target declared 'Boost::headers' -- Conan: Component target declared 'Boost::boost' -- Conan: Component target declared 'boost::_libboost' -- Conan: Component target declared 'Boost::atomic' -- Conan: Component target declared 'Boost::container' -- Conan: Component target declared 'Boost::context' -- Conan: Component target declared 'Boost::date_time' -- Conan: Component target declared 'Boost::exception' -- Conan: Component target declared 'Boost::math' -- Conan: Component target declared 'Boost::math_c99' -- Conan: Component target declared 'Boost::math_c99f' -- Conan: Component target declared 'Boost::math_c99l' -- Conan: Component target declared 'Boost::math_tr1' -- Conan: Component target declared 'Boost::math_tr1f' -- Conan: Component target declared 'Boost::math_tr1l' -- Conan: Component target declared 'Boost::program_options' -- Conan: Component target declared 'Boost::regex' -- Conan: Component target declared 'Boost::serialization' -- Conan: Component target declared 'Boost::stacktrace' -- Conan: Component target declared 'Boost::stacktrace_addr2line' -- Conan: Component target declared 'Boost::stacktrace_backtrace' -- Conan: Component target declared 'Boost::stacktrace_basic' -- Conan: Component target declared 'Boost::stacktrace_noop' -- Conan: Component target declared 'Boost::system' -- Conan: Component target declared 'Boost::test' -- Conan: Component target declared 'Boost::test_exec_monitor' -- Conan: Component target declared 'Boost::url' -- Conan: Component target declared 'Boost::wserialization' -- Conan: Component target declared 'Boost::chrono' -- Conan: Component target declared 'Boost::coroutine' -- Conan: Component target declared 'Boost::filesystem' -- Conan: Component target declared 'Boost::json' -- Conan: Component target declared 'Boost::nowide' -- Conan: Component target declared 'Boost::prg_exec_monitor' -- Conan: Component target declared 'Boost::random' -- Conan: Component target declared 'Boost::thread' -- Conan: Component target declared 'Boost::timer' -- Conan: Component target declared 'Boost::type_erasure' -- Conan: Component target declared 'Boost::unit_test_framework' -- Conan: Component target declared 'Boost::wave' -- Conan: Component target declared 'Boost::contract' -- Conan: Component target declared 'Boost::fiber' -- Conan: Component target declared 'Boost::fiber_numa' -- Conan: Component target declared 'Boost::graph' -- Conan: Component target declared 'Boost::iostreams' -- Conan: Component target declared 'Boost::locale' -- Conan: Component target declared 'Boost::log' -- Conan: Component target declared 'Boost::log_setup' -- Conan: Target declared 'boost::boost' -- Conan: Target declared 'BZip2::BZip2' -- Conan: Including build module from '/home/conan/w/prod-v1/BuildSingleReference/.conan/data/bzip2/1.0.8/_/_/package/b27e2b40bcb70be2e7d6f0e0c6e43e35c530f8d3/lib/cmake/conan-official-bzip2-variables.cmake' -- Conan: Target declared 'libbacktrace::libbacktrace' -- Conan: Target declared 'xtensor' -- Conan: Target declared 'xtl' -- Conan: Target declared 'nlohmann_json::nlohmann_json' -- Conan: Target declared 'xsimd' -- Conan: Component target declared 'libdeflate::libdeflate_static' -- Conan: Target declared 'phmap' -- Conan: Component target declared 'spdlog::spdlog' -- Configuring done -- Generating done -- Build files have been written to: /home/conan/w/prod-v1/BuildSingleReference/cci-5b63a183/recipes/hictk/all/test_package/build/Release hictk/0.0.1 (test package): CMake command: cmake --build "/home/conan/w/prod-v1/BuildSingleReference/cci-5b63a183/recipes/hictk/all/test_package/build/Release" '--' '-j3' ----Running------ > cmake --build "/home/conan/w/prod-v1/BuildSingleReference/cci-5b63a183/recipes/hictk/all/test_package/build/Release" '--' '-j3' ----------------- Scanning dependencies of target test_package [ 50%] Building CXX object CMakeFiles/test_package.dir/test_package.cpp.o CMakeFiles/test_package.dir/build.make:81: recipe for target 'CMakeFiles/test_package.dir/test_package.cpp.o' failed CMakeFiles/Makefile2:94: recipe for target 'CMakeFiles/test_package.dir/all' failed Makefile:102: recipe for target 'all' failed In file included from /home/conan/w/prod-v1/BuildSingleReference/.conan/data/hictk/0.0.1/_/_/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9/include/hictk/genomic_interval.hpp:10:0, from /home/conan/w/prod-v1/BuildSingleReference/.conan/data/hictk/0.0.1/_/_/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9/include/hictk/bin_table.hpp:14, from /home/conan/w/prod-v1/BuildSingleReference/.conan/data/hictk/0.0.1/_/_/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9/include/hictk/fmt/bin_table.hpp:9, from /home/conan/w/prod-v1/BuildSingleReference/.conan/data/hictk/0.0.1/_/_/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9/include/hictk/fmt.hpp:7, from /home/conan/w/prod-v1/BuildSingleReference/cci-5b63a183/recipes/hictk/all/test_package/test_package.cpp:2: /home/conan/w/prod-v1/BuildSingleReference/.conan/data/hictk/0.0.1/_/_/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9/include/hictk/reference.hpp:11:10: fatal error: filesystem: No such file or directory #include ^~~~~~~~~~~~ compilation terminated. make[2]: *** [CMakeFiles/test_package.dir/test_package.cpp.o] Error 1 make[1]: *** [CMakeFiles/test_package.dir/all] Error 2 make: *** [all] Error 2 hictk/0.0.1 (test package): WARN: Using the new toolchains and generators without specifying a build profile (e.g: -pr:b=default) is discouraged and might cause failures and unexpected behavior hictk/0.0.1 (test package): WARN: Using the new toolchains and generators without specifying a build profile (e.g: -pr:b=default) is discouraged and might cause failures and unexpected behavior ERROR: hictk/0.0.1 (test package): Error in build() method, line 21 cmake.build() ConanException: Error 2 while executing cmake --build "/home/conan/w/prod-v1/BuildSingleReference/cci-5b63a183/recipes/hictk/all/test_package/build/Release" '--' '-j3'