Auto detecting your dev setup to initialize the default profile (/home/conan/w/cci_PR-3679/.conan/profiles/default) CC and CXX: /usr/bin/gcc, /usr/bin/g++ Found gcc 4.9 Default settings os=Linux os_build=Linux arch=x86_64 arch_build=x86_64 compiler=gcc compiler.version=4.9 compiler.libcxx=libstdc++ build_type=Release *** You can change them in /home/conan/w/cci_PR-3679/.conan/profiles/default *** *** Or override with -s compiler='other' -s ...s*** [HOOK - conan-center.py] pre_export(): [DEPRECATED GLOBAL CPPSTD (KB-H001)] OK [HOOK - conan-center.py] pre_export(): [REFERENCE LOWERCASE (KB-H002)] OK [HOOK - conan-center.py] pre_export(): [RECIPE METADATA (KB-H003)] OK [HOOK - conan-center.py] pre_export(): [HEADER_ONLY, NO COPY SOURCE (KB-H005)] OK [HOOK - conan-center.py] pre_export(): [FPIC OPTION (KB-H006)] OK [HOOK - conan-center.py] pre_export(): [VERSION RANGES (KB-H008)] OK [HOOK - conan-center.py] pre_export(): [RECIPE FOLDER SIZE (KB-H009)] Total recipe size: 5.9833984375 KB [HOOK - conan-center.py] pre_export(): [RECIPE FOLDER SIZE (KB-H009)] OK [HOOK - conan-center.py] pre_export(): [EXPORT LICENSE (KB-H023)] exports: None [HOOK - conan-center.py] pre_export(): [EXPORT LICENSE (KB-H023)] exports: None [HOOK - conan-center.py] pre_export(): [EXPORT LICENSE (KB-H023)] OK [HOOK - conan-center.py] pre_export(): [TEST PACKAGE FOLDER (KB-H024)] OK [HOOK - conan-center.py] pre_export(): [META LINES (KB-H025)] OK [HOOK - conan-center.py] pre_export(): [CONAN CENTER INDEX URL (KB-H027)] OK [HOOK - conan-center.py] pre_export(): [CMAKE MINIMUM VERSION (KB-H028)] OK [HOOK - conan-center.py] pre_export(): [TEST PACKAGE - RUN ENVIRONMENT (KB-H029)] OK [HOOK - conan-center.py] pre_export(): [SYSTEM REQUIREMENTS (KB-H032)] OK [HOOK - conan-center.py] pre_export(): [CONANDATA.YML FORMAT (KB-H030)] OK [HOOK - conan-center.py] pre_export(): [TEST PACKAGE - NO IMPORTS() (KB-H034)] OK [HOOK - conan-center.py] pre_export(): [NO AUTHOR (KB-H037)] OK [HOOK - conan-center.py] pre_export(): [NO TARGET NAME (KB-H040)] OK [HOOK - conan-center.py] pre_export(): [NO FINAL ENDLINE (KB-H041)] OK [HOOK - conan-center.py] pre_export(): [NO REQUIRES.ADD() (KB-H044)] OK [HOOK - conan-center.py] pre_export(): [DELETE OPTIONS (KB-H045)] OK [HOOK - conan-center.py] pre_export(): [NO ASCII CHARACTERS (KB-H047)] OK [HOOK - conan-center.py] pre_export(): [CMAKE VERBOSE MAKEFILE (KB-H046)] OK [HOOK - conan-center.py] pre_export(): [CMAKE VERSION REQUIRED (KB-H048)] OK [HOOK - conan-center.py] pre_export(): [CMAKE WINDOWS EXPORT ALL SYMBOLS (KB-H049)] OK [HOOK - conan-center.py] pre_export(): [DEFAULT OPTIONS AS DICTIONARY (KB-H051)] OK [HOOK - conan-center.py] pre_export(): [CONFIG.YML HAS NEW VERSION (KB-H052)] OK [HOOK - conan-center.py] pre_export(): [PRIVATE IMPORTS (KB-H053)] OK Exporting package recipe seqan/2.4.0 exports: File 'conandata.yml' found. Exporting it... seqan/2.4.0 exports: Copied 1 '.yml' file: conandata.yml [HOOK - conan-center.py] post_export(): [CONANDATA.YML REDUCE (KB-H031)] Saving conandata.yml: {'sources': {'2.4.0': {'url': 'http://packages.seqan.de/seqan-library/seqan-library-2.4.0.tar.xz', 'sha256': 'dd97b1514ab83acb7d7be911b157979e188e8ca72cc61c430c1e0fd03bcd41a5'}}} [HOOK - conan-center.py] post_export(): [CONANDATA.YML REDUCE (KB-H031)] New conandata.yml contents: sources: 2.4.0: sha256: dd97b1514ab83acb7d7be911b157979e188e8ca72cc61c430c1e0fd03bcd41a5 url: http://packages.seqan.de/seqan-library/seqan-library-2.4.0.tar.xz [HOOK - conan-center.py] post_export(): [CONANDATA.YML REDUCE (KB-H031)] OK [HOOK - conan-center.py] post_export(): [DEFAULT SHARED OPTION VALUE (KB-H050)] OK seqan/2.4.0: A new conanfile.py version was exported seqan/2.4.0: Folder: /home/conan/w/cci_PR-3679/.conan/data/seqan/2.4.0/_/_/export seqan/2.4.0: Using the exported files summary hash as the recipe revision: a5614cc210504711c964b22dccb67abd seqan/2.4.0: Exported revision: a5614cc210504711c964b22dccb67abd Configuration: [settings] arch=x86_64 arch_build=x86_64 build_type=Release compiler=gcc compiler.libcxx=libstdc++ compiler.version=4.9 os=Linux os_build=Linux [options] [build_requires] [env] seqan/2.4.0: Forced build from source seqan/2.4.0 (test package): Installing package Requirements seqan/2.4.0 from local cache - Cache Packages seqan/2.4.0:5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9 - Build Installing (downloading, building) binaries... [HOOK - conan-center.py] pre_source(): [IMMUTABLE SOURCES (KB-H010)] OK seqan/2.4.0: Configuring sources in /home/conan/w/cci_PR-3679/.conan/data/seqan/2.4.0/_/_/source [HOOK - conan-center.py] post_source(): [LIBCXX MANAGEMENT (KB-H011)] OK [HOOK - conan-center.py] post_source(): [CPPSTD MANAGEMENT (KB-H022)] OK seqan/2.4.0: Building your package in /home/conan/w/cci_PR-3679/.conan/data/seqan/2.4.0/_/_/build/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9 seqan/2.4.0: Generator txt created conanbuildinfo.txt [HOOK - conan-center.py] pre_build(): [FPIC MANAGEMENT (KB-H007)] 'fPIC' option not found [HOOK - conan-center.py] pre_build(): [FPIC MANAGEMENT (KB-H007)] OK seqan/2.4.0: Calling build() seqan/2.4.0: Package '5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9' built seqan/2.4.0: Build folder /home/conan/w/cci_PR-3679/.conan/data/seqan/2.4.0/_/_/build/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9 seqan/2.4.0: Generated conaninfo.txt seqan/2.4.0: Generated conanbuildinfo.txt seqan/2.4.0: Generating the package seqan/2.4.0: Package folder /home/conan/w/cci_PR-3679/.conan/data/seqan/2.4.0/_/_/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9 seqan/2.4.0: Calling package() [HOOK - conan-center.py] post_package(): [PACKAGE LICENSE (KB-H012)] OK [HOOK - conan-center.py] post_package(): [DEFAULT PACKAGE LAYOUT (KB-H013)] OK [HOOK - conan-center.py] post_package(): [MATCHING CONFIGURATION (KB-H014)] OK [HOOK - conan-center.py] post_package(): [SHARED ARTIFACTS (KB-H015)] OK [HOOK - conan-center.py] post_package(): [PC-FILES (KB-H020)] OK [HOOK - conan-center.py] post_package(): [CMAKE-MODULES-CONFIG-FILES (KB-H016)] OK [HOOK - conan-center.py] post_package(): [PDB FILES NOT ALLOWED (KB-H017)] OK [HOOK - conan-center.py] post_package(): [LIBTOOL FILES PRESENCE (KB-H018)] OK [HOOK - conan-center.py] post_package(): [MS RUNTIME FILES (KB-H021)] OK seqan/2.4.0 package(): Packaged 1 file: LICENSE seqan/2.4.0 package(): Packaged 729 '.h' files seqan/2.4.0: Package '5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9' created seqan/2.4.0: Created package revision da3fc54dc3ef79b65e73c5267fa9924b [HOOK - conan-center.py] post_package_info(): [CMAKE FILE NOT IN BUILD FOLDERS (KB-H019)] OK seqan/2.4.0 (test package): Generator txt created conanbuildinfo.txt seqan/2.4.0 (test package): Generator cmake created conanbuildinfo.cmake seqan/2.4.0 (test package): Generated conaninfo.txt seqan/2.4.0 (test package): Generated graphinfo Using lockfile: '/home/conan/w/cci_PR-3679/2/b5aed35d-a667-4311-bf28-be4c654d92e5/recipes/seqan/2.x.x/test_package/build/dfae4d6ba682b8d9c5630c4c912db585c2a46c64/conan.lock' Using cached profile from lockfile [HOOK - conan-center.py] pre_build(): [FPIC MANAGEMENT (KB-H007)] 'fPIC' option not found [HOOK - conan-center.py] pre_build(): [FPIC MANAGEMENT (KB-H007)] OK seqan/2.4.0 (test package): Calling build() ----Running------ > cd '/home/conan/w/cci_PR-3679/2/b5aed35d-a667-4311-bf28-be4c654d92e5/recipes/seqan/2.x.x/test_package/build/dfae4d6ba682b8d9c5630c4c912db585c2a46c64' && cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE="Release" -DCONAN_IN_LOCAL_CACHE="OFF" -DCONAN_COMPILER="gcc" -DCONAN_COMPILER_VERSION="4.9" -DCONAN_CXX_FLAGS="-m64" -DCONAN_SHARED_LINKER_FLAGS="-m64" -DCONAN_C_FLAGS="-m64" -DCONAN_LIBCXX="libstdc++" -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY="ON" -DCONAN_EXPORTED="1" -Wno-dev '/home/conan/w/cci_PR-3679/2/b5aed35d-a667-4311-bf28-be4c654d92e5/recipes/seqan/2.x.x/test_package' ----------------- -- The CXX compiler identification is GNU 4.9.4 -- Check for working CXX compiler: /usr/bin/g++ -- Check for working CXX compiler: /usr/bin/g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Conan: called by CMake conan helper -- Conan: Adjusting output directories -- Conan: Using cmake targets configuration -- Conan: Adjusting default RPATHs Conan policies -- Conan: Adjusting language standard -- Conan: Checking correct version: 4.9 -- Conan: C++ stdlib: libstdc++ -- Configuring done -- Generating done -- Build files have been written to: /home/conan/w/cci_PR-3679/2/b5aed35d-a667-4311-bf28-be4c654d92e5/recipes/seqan/2.x.x/test_package/build/dfae4d6ba682b8d9c5630c4c912db585c2a46c64 ----Running------ > cmake --build '/home/conan/w/cci_PR-3679/2/b5aed35d-a667-4311-bf28-be4c654d92e5/recipes/seqan/2.x.x/test_package/build/dfae4d6ba682b8d9c5630c4c912db585c2a46c64' '--' '-j3' ----------------- Scanning dependencies of target test_package [ 50%] Building CXX object CMakeFiles/test_package.dir/test_package.cpp.o [100%] Linking CXX executable bin/test_package [100%] Built target test_package seqan/2.4.0 (test package): Running test() ----Running------ > bin/test_package ----------------- gaps AB--CD-EFG-HIJ seq ABCDEFGHIJ beginPosition(gaps) == 0 endPosition(gaps) == 10 clippedBeginPosition(gaps) == 0 clippedEndPosition(gaps) == 14 gaps -CD-EFG seq CDEFG beginPosition(gaps) == 2 endPosition(gaps) == 7 clippedBeginPosition(gaps) == 3 clippedEndPosition(gaps) == 10 4 view position => 4 source position 2 source position => 1 view position 3 clipped gapped => 6 unclipped gapped 6 unclipped gapped => 2 clipped gapped 3 clipped ungapped => 5 unclipped ungapped 5 unclipped ungapped => 3 clipped ungapped 3 clipped gapped => 2 clipped ungapped 4 unclipped ungapped => 7 unclipped gapped JSON file created at '/home/conan/w/cci_PR-3679/2/b5aed35d-a667-4311-bf28-be4c654d92e5/_create.json'