******************************************************************************** conan install cgns/3.4.1@ --profile=/home/conan/w/BuildSingleReference/6740/bff9bd28-982d-4941-9839-8cc841e049b0/profile.txt --build=cgns ******************************************************************************** Configuration: [settings] arch=x86_64 arch_build=x86_64 build_type=Release compiler=gcc compiler.libcxx=libstdc++11 compiler.version=6 os=Linux os_build=Linux [options] cgns:shared=False [build_requires] [env] cgns/3.4.1: Forced build from source Installing package: cgns/3.4.1 Requirements cgns/3.4.1 from local cache - Cache hdf5/1.12.0 from 'conan-center' - Cache zlib/1.2.11 from 'conan-center' - Cache Packages cgns/3.4.1:9f384017b60a81d25707385695d2c7aa8a4042e9 - Build hdf5/1.12.0:5a07a96406c5f4667a1af45787de9f85bbd41716 - Cache zlib/1.2.11:f7e573cb501ccfc49e9e4d84de886bc1ef2e6ebb - Cache Installing (downloading, building) binaries... zlib/1.2.11: Already installed! [HOOK - conan-center.py] post_package_info(): [CMAKE FILE NOT IN BUILD FOLDERS (KB-H019)] OK hdf5/1.12.0: Already installed! [HOOK - conan-center.py] post_package_info(): [CMAKE FILE NOT IN BUILD FOLDERS (KB-H019)] OK cgns/3.4.1: Copying sources to build folder cgns/3.4.1: Building your package in /home/conan/w/BuildSingleReference/.conan/data/cgns/3.4.1/_/_/build/9f384017b60a81d25707385695d2c7aa8a4042e9 cgns/3.4.1: Generator cmake created conanbuildinfo.cmake [HOOK - conan-center.py] pre_build(): [FPIC MANAGEMENT (KB-H007)] OK. 'fPIC' option found and apparently well managed [HOOK - conan-center.py] pre_build(): [FPIC MANAGEMENT (KB-H007)] OK cgns/3.4.1: Calling build() ----Running------ > cd '/home/conan/w/BuildSingleReference/.conan/data/cgns/3.4.1/_/_/build/9f384017b60a81d25707385695d2c7aa8a4042e9' && cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE="Release" -DCONAN_IN_LOCAL_CACHE="ON" -DCONAN_COMPILER="gcc" -DCONAN_COMPILER_VERSION="6" -DCONAN_CXX_FLAGS="-m64" -DCONAN_SHARED_LINKER_FLAGS="-m64" -DCONAN_C_FLAGS="-m64" -DBUILD_SHARED_LIBS="OFF" -DCMAKE_INSTALL_PREFIX="/home/conan/w/BuildSingleReference/.conan/data/cgns/3.4.1/_/_/package/9f384017b60a81d25707385695d2c7aa8a4042e9" -DCMAKE_INSTALL_BINDIR="bin" -DCMAKE_INSTALL_SBINDIR="bin" -DCMAKE_INSTALL_LIBEXECDIR="bin" -DCMAKE_INSTALL_LIBDIR="lib" -DCMAKE_INSTALL_INCLUDEDIR="include" -DCMAKE_INSTALL_OLDINCLUDEDIR="include" -DCMAKE_INSTALL_DATAROOTDIR="share" -DCONAN_CMAKE_POSITION_INDEPENDENT_CODE="ON" -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY="ON" -DCONAN_EXPORTED="1" -DCGNS_BUILD_SHARED="False" -DCGNS_ENABLE_HDF5="True" -Wno-dev '/home/conan/w/BuildSingleReference/.conan/data/cgns/3.4.1/_/_/build/9f384017b60a81d25707385695d2c7aa8a4042e9' ----------------- -- The C compiler identification is GNU 6.4.0 -- The CXX compiler identification is GNU 6.4.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Conan: called by CMake conan helper -- Conan: called inside local cache -- Conan: Adjusting output directories -- Conan: Using cmake targets configuration -- Library hdf5_hl_cpp found /home/conan/w/BuildSingleReference/.conan/data/hdf5/1.12.0/_/_/package/5a07a96406c5f4667a1af45787de9f85bbd41716/lib/libhdf5_hl_cpp.a -- Library hdf5_hl found /home/conan/w/BuildSingleReference/.conan/data/hdf5/1.12.0/_/_/package/5a07a96406c5f4667a1af45787de9f85bbd41716/lib/libhdf5_hl.a -- Library hdf5_cpp found /home/conan/w/BuildSingleReference/.conan/data/hdf5/1.12.0/_/_/package/5a07a96406c5f4667a1af45787de9f85bbd41716/lib/libhdf5_cpp.a -- Library hdf5 found /home/conan/w/BuildSingleReference/.conan/data/hdf5/1.12.0/_/_/package/5a07a96406c5f4667a1af45787de9f85bbd41716/lib/libhdf5.a -- Library z found /home/conan/w/BuildSingleReference/.conan/data/zlib/1.2.11/_/_/package/f7e573cb501ccfc49e9e4d84de886bc1ef2e6ebb/lib/libz.a -- Conan: Adjusting default RPATHs Conan policies -- Conan: Adjusting language standard -- Conan: Adjusting fPIC flag (ON) -- Conan: Compiler GCC>=5, checking major version 6 -- Conan: Checking correct version: 6 -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of long -- Check size of long - done -- Check size of off_t -- Check size of off_t - done -- Testing HDF5 Multi_Dataset - NOT FOUND -- Testing HDF5 Collective_metadata - NOT FOUND -- Performing Test CHECK_HAVE_STAT64_STRUCT -- Performing Test CHECK_HAVE_STAT64_STRUCT - Failed -- Configuring done -- Generating done -- Build files have been written to: /home/conan/w/BuildSingleReference/.conan/data/cgns/3.4.1/_/_/build/9f384017b60a81d25707385695d2c7aa8a4042e9 ----Running------ > cmake --build '/home/conan/w/BuildSingleReference/.conan/data/cgns/3.4.1/_/_/build/9f384017b60a81d25707385695d2c7aa8a4042e9' '--' '-j3' ----------------- Scanning dependencies of target cgns_static [ 3%] Building C object source_subfolder/src/CMakeFiles/cgns_static.dir/cgns_error.c.o [ 7%] Building C object source_subfolder/src/CMakeFiles/cgns_static.dir/cgns_internals.c.o [ 11%] Building C object source_subfolder/src/CMakeFiles/cgns_static.dir/cgns_io.c.o [ 14%] Building C object source_subfolder/src/CMakeFiles/cgns_static.dir/cgnslib.c.o [ 18%] Building C object source_subfolder/src/CMakeFiles/cgns_static.dir/adf/ADF_interface.c.o [ 22%] Building C object source_subfolder/src/CMakeFiles/cgns_static.dir/adf/ADF_internals.c.o [ 25%] Building C object source_subfolder/src/CMakeFiles/cgns_static.dir/adfh/ADFH.c.o [ 29%] Linking C static library ../../lib/libcgns.a [ 29%] Built target cgns_static Scanning dependencies of target cgnsconvert Scanning dependencies of target cgnsdiff [ 33%] Building C object source_subfolder/src/tools/CMakeFiles/cgnsconvert.dir/cgnsconvert.c.o Scanning dependencies of target cgnscheck [ 37%] Building C object source_subfolder/src/tools/CMakeFiles/cgnsdiff.dir/cgnsdiff.c.o [ 40%] Building C object source_subfolder/src/tools/CMakeFiles/cgnscheck.dir/cgnscheck.c.o [ 44%] Building C object source_subfolder/src/tools/CMakeFiles/cgnsconvert.dir/getargs.c.o [ 48%] Linking C executable ../../../bin/cgnsconvert [ 48%] Built target cgnsconvert Scanning dependencies of target cgnsnames [ 51%] Building C object source_subfolder/src/tools/CMakeFiles/cgnsnames.dir/cgnsnames.c.o [ 55%] Building C object source_subfolder/src/tools/CMakeFiles/cgnsdiff.dir/getargs.c.o [ 59%] Building C object source_subfolder/src/tools/CMakeFiles/cgnsnames.dir/cgnames.c.o [ 62%] Linking C executable ../../../bin/cgnsdiff [ 66%] Linking C executable ../../../bin/cgnsnames [ 66%] Built target cgnsnames [ 70%] Building C object source_subfolder/src/tools/CMakeFiles/cgnscheck.dir/getargs.c.o [ 70%] Built target cgnsdiff [ 74%] Building C object source_subfolder/src/tools/CMakeFiles/cgnscheck.dir/hash.c.o Scanning dependencies of target cgnslist [ 77%] Building C object source_subfolder/src/tools/CMakeFiles/cgnslist.dir/cgnslist.c.o [ 81%] Building C object source_subfolder/src/tools/CMakeFiles/cgnslist.dir/getargs.c.o Scanning dependencies of target cgnscompress [ 85%] Building C object source_subfolder/src/tools/CMakeFiles/cgnscompress.dir/cgnscompress.c.o [ 92%] Linking C executable ../../../bin/cgnscompress [ 92%] Linking C executable ../../../bin/cgnslist [ 92%] Built target cgnslist [ 96%] Building C object source_subfolder/src/tools/CMakeFiles/cgnscheck.dir/cgnames.c.o [ 96%] Built target cgnscompress source_subfolder/src/tools/CMakeFiles/cgnscheck.dir/build.make:81: recipe for target 'source_subfolder/src/tools/CMakeFiles/cgnscheck.dir/cgnscheck.c.o' failed CMakeFiles/Makefile2:269: recipe for target 'source_subfolder/src/tools/CMakeFiles/cgnscheck.dir/all' failed Makefile:170: recipe for target 'all' failed cgns/3.4.1: Received SIGTERM! CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_BINDIR CMAKE_INSTALL_DATAROOTDIR CMAKE_INSTALL_INCLUDEDIR CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LIBEXECDIR CMAKE_INSTALL_OLDINCLUDEDIR CMAKE_INSTALL_SBINDIR /home/conan/w/BuildSingleReference/.conan/data/cgns/3.4.1/_/_/build/9f384017b60a81d25707385695d2c7aa8a4042e9/source_subfolder/src/cgns_io.c: In function ‘cgio_check_file’: /home/conan/w/BuildSingleReference/.conan/data/cgns/3.4.1/_/_/build/9f384017b60a81d25707385695d2c7aa8a4042e9/source_subfolder/src/cgns_io.c:604:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread (buf, 1, sizeof(buf), fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/conan/w/BuildSingleReference/.conan/data/cgns/3.4.1/_/_/build/9f384017b60a81d25707385695d2c7aa8a4042e9/source_subfolder/src/adf/ADF_interface.c: In function ‘ADF_Database_Valid’: /home/conan/w/BuildSingleReference/.conan/data/cgns/3.4.1/_/_/build/9f384017b60a81d25707385695d2c7aa8a4042e9/source_subfolder/src/adf/ADF_interface.c:1022:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread (header, sizeof(char), 32, fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc: internal compiler error: Terminated (program cc1) Please submit a full bug report, with preprocessed source if appropriate. See for instructions. make[2]: *** [source_subfolder/src/tools/CMakeFiles/cgnscheck.dir/cgnscheck.c.o] Error 4 make[1]: *** [source_subfolder/src/tools/CMakeFiles/cgnscheck.dir/all] Error 2 make: *** [all] Error 2 cgns/3.4.1: ERROR: Package '9f384017b60a81d25707385695d2c7aa8a4042e9' build failed cgns/3.4.1: WARN: Build folder /home/conan/w/BuildSingleReference/.conan/data/cgns/3.4.1/_/_/build/9f384017b60a81d25707385695d2c7aa8a4042e9 ERROR: Exiting with code: 5